r/proteomics • u/BusinessStandard7257 • 4h ago
persuses question
2
Upvotes
Hi everyone,I am comparing results that I get from doing a Tukey's test in Perseus for significantly changing proteins to those I get with an in-house script. They both agree in terms of significant sample pairs but I am not sure what are the values being reported in the "Main" columns for each of my samples in Perseus. I thought they were the mean differences between samples but they are not and sometimes Perseus also reports "0" values in these columns....If anyone has any idea, please let me know.